General framework for network extraction, path mining.

NetPathMiner implements a flexible module-based process flow for network path mining and visualization, which can be fully inte-grated with user-customized functions. NetPathMiner supports construction of various types of genome scale networks from KGML, SBML and BioPAX formats, enabling its utility to most common pathway databases. NetPathMiner also provides different visualization techniques to facilitate the analysis of even thousands of output paths.

Author

Ahmed Mohamed mohamed@kuicr.kyoto-u.ac.jp